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Bioinformatics for Cell Biologists March 15 19, 2010 The course provides essential, practical knowledge about computational methods in biology with focus on developmental ...

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Schedule to pages with course schedule

Venue The course venue is the Computer hall Space at the Berzelius laboratory (same building as the KI library, the KI bookstore and the Jöns Jacob Restaurant).

Examination The exam takes places on Tuesday, May 29 in the seminar room A216 at CMB. The exam consists of project presentations by the course students using the ...

PastYears These are links to the previous course homepages.   2008 Spring Semester

Core set of Web Resources covered: NCBI Databases: Entrez Gene Homologene Blast, variations of blast GEO REFSEQ UNIPROT SWISSPROT Gene ontology KEGG pathways ...

Group3: LIM homeobox transcription factor 1 alpha (Lmx1a) Jamie, Gayathri Emma Introduction Lmx1a was initially found to be expressed in insulin producing beta ...

Bioinformatics study on Bruton's Tyrosine Kinase (BTK) Introduction Bruton's agammaglobulinemia tyrosine kinase (Btk) is a cytoplasmic tyrosine kinase important in ...

IndranilSinha 25 May 2009 SETD2 SET domain containing 2 Official Symbol SETD2 and Name: SET domain containing 2 Homo sapiens Other Aliases: FLJ16420, FLJ22472 ...

IndranilSinha 29 May 2009 Histone Overview (Figure from Biology: Concepts and Connections by Campell, Mitchell, and Reece. Text from Introduction to Cell and Molecular ...

BinZhao 28 May 2009 Protein Structure Protein name: Tyrosine protein kinase BTK Organism: sapiens (Human) Sequence length: 659 AA. Subcellular location: Cytoplasm ...

. BTK mRNA . . . . Splicing prediction (GENSCAN) . . . . Regulation of expression . . . . Regulation of expression (zoomed to upstream region) . . . . Regulation ...

BTKbase

AmmadKhan 28 May 2009 Pilot ENCODE Transcription Affy RNA... No data chr3 BU First Exon No data chr3 Riken CAGE No data chr3 Stanf Promoter No data chr3 Stanf ...

Sequences of SET2 Homo sapiens MERRGKYSSKLERESKRTSENEAIKRCCSPPNELGFRRGSSYSKHDSSASRYKSTLSKPIPKSDKFKNSFCCTELNEEIKQSHSFSLQTPCSKGSELRMINKNPEREKAGSPAPSNRLNDSPTLKKLDELPIFKSEFITHDSHDSIKELDSLSKVKNDQLRSFCPIELNINGSPGAESDLATFCTSKTDAVLMTSDDSVTGSELSPLVKACMLSSNGFQNISRCKEKDLDDTCMLHKKSESPFRETEPLVSPHQDKLMSMPVMTVDYSKTVVKEPVDTRVSCCKTKDSDIYCTLNDSNPSLCNSEAENIEPSVMKISSNSFMNVHLESKPVICDSRNLTDHSKFACEEYKQSIGSTSSASVNHFDDLYQPIGSSGIASSLQSLPPGIKVDSLTLLKCGENTSPVLDAVLKSKKSSEFLKHAGKETIVEVGSDLPDSGKGFASRENRRNNGLSGKCLQEAQEEGNSILPERRGRPEISLDERGEGGHVHTSDDSEVVFSSCDLNLTMEDSDGVTYALKCDSSGHAPEIVSTVHEDYSGSSESSNDESDSEDTDSDDSSIPRNRLQSVVVVPKNSTLPMEETSPCSSRSSQSYRHYSDHWEDERLESRRHLYEEKFESIASKACPQTDKFFLHKGTEKNPEISFTQSSRKQIDNRLPELSHPQSDGVDSTSHTDVKSDPLGHPNSEETVKAKIPSRQQEELPIYSSDFEDVPNKSWQQTTFQNRPDSRLGKTELSFSSSCEIPHVDGLHSSEELRNLGWDFSQEKPSTTYQQPDSSYGACGGHKYQQNAEQYGGTRDYWQGNGYWDPRSGRPPGTGVVYDRTQGQVPDSLTDDREEEENWDQQDGSHFSDQSDKFLLSLQKDKGSVQAPEISSNSIKDTLAVNEKKDFSKNLEKNDIKDRGPLKKRRQEIESDSESDGELQDRKKVRVEVEQGETSVPPGSALVGPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTCLELIQNTHSQSCLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHLPIPTKNMLEESKVLPIIQRWSQTKTAVPPLSEGDGYSSENTSRAHTPLNTPDPSTKLSTEADTDTPKKLMFRRLKIISENSMDSAISDATSELEGKDGKEDLDQLENVPVEEEEELQSQQLLPQQLPECKVDSETNIEASKLPTSEPEADAEIEPKESNGTKLEEPINEETPSQDEEEGVSDVESERSQEQPDKTVDISDLATKLLDSWKDLKEVYRIPKKSQTEKENTTTERGRDAVGFRDQTPAPKTPNRSRERDPDKQTQNKEKRKRRSSLSPPSSAYERGTKRPDDRYDTPTSKKKVRIKDRNKLSTEERRKLFEQEVAQREAQKQQQQMQNLGMTSPLPYDSLGYNAPHHPFAGYPPGYPMQAYVDPSNPNAGKVLLPTPSMDPVCSPAPYDHAQPLVGHSTEPLSAPPPVPVVPHVAAPVEVSSSQYVAQSDGVVHQDSSVAVLPVPAPGPVQGQNYSVWDSNQQSVSVQQQYSPAQSQATIYYQGQTCPTVYGVTSPYSQTTPPIVQSYAQPSLQYIQGQQIFTAHPQGVVVQPAAAVTTIVAPGQPQPLQPSEMVVTNNLLDLPPPSPPKPKTIVLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAEMDLGTPTYDENPMKASKKPKTAEADTSSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVYKPKEDTELE ...

KrupanidhiSrirama 26 May 2009 Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus containing, or other groups, from ...

LimYunPing 25 May 2009 Wnt IntroDuction

HossainNawaz 25 May 2009 http://www.ncbi.nlm.nih.gov Btk

TolgaSutlu 25 May 2009 This is a hyperlink

Wnt4 Introduction: The WNT gene family consists of structurally related genes which encode secreted signaling proteins. These proteins have been implicated in oncogenesis ...

Literature links Useful primers from Nature Biotechnology: Understanding genome browsing (Melissa S Cline W James Kent) February 2009, Vol 27, No 2; pp 153 ...

This page contains links to important bioinformatics resources on the internet as well as literature links for the course. Genomes and Gene Annotations: USCS Genome ...

Course syllabus The course provides essential, practical knowledge about computational and bioinformatics methods in biology with focus on developmental biology. The ...

Contact Course director Rickard Sandberg, CMB 17177 Karolinska Institutet. Email rickard.sandberg #64;ki.se.

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