This page contains links to important bioinformatics resources on the internet as well as literature links for the course.

Genomes and Gene Annotations:

USCS Genome Browser: Universal portal for genome sequence and annotations

Ensembl Genome Browser: Universal portal for genome sequence and annotations

NCBI Genome Biology: Universal portal for genome sequence and annotations

Gene Ontology: Systematic gene annotations

Mapping of Sequences to Genomes and Transcriptomes:

BLAT: Efficient tool for mapping sequences onto genomes

BLAST: Basic Local Alignment Search Tool

SIM4

Gene Set Enrichments (e.g. Pathways) Online Tools:

DAVID

GOminer

GSEA

Sequence Motifs:

Splice site strengths

Sequence LOGOs

ESE-finder

microRNA sites:

miRBase

TargetScan

TargetRank

Developmental Expression Patterns:

Allen Brain Map

Mamep: in situ of mouse embryos

GenePaint

VisiGene

Online workbench for genome-wide studies

Galaxy

Gene Expression Deposits:

Gene Expression Omnibus

ArrayExpress

Celsius

Programming Courses for Biologists:

Python Course in Bioinformtics, Pasteur Institute

Python Programming for Bioinformtics

-- RickardSandberg - 27 Apr 2009