Literature links

Useful primers from Nature Biotechnology:

Understanding genome browsing
(Melissa S Cline & W James Kent)
February 2009, Vol 27, No 2; pp 153 - 155
doi: 10.1038/nbt0209-153

What are decision trees?
(Carl Kingsford & Steven L Salzberg)
September 2008, Volume 26, No 9; pp 1011 - 1013
doi: 10.1038/nbt0908-1011

What is the expectation maximization algorithm?
(Chuong B Do & Serafim Batzoglou)
August 2008, Volume 26 No 8; pp 897 - 899
doi: 10.1038/nbt1406

What is principal component analysis?
(Markus Ringnér)
March 2008, Volume 26, No 3; pp 303 - 304
doi: 10.1038/nbt0308-303

What are artificial neural networks?
(Anders Krogh)
February 2008, Volume 26, No 2; pp 195 - 197
doi: 10.1038/nbt1386

How does eukaryotic gene prediction work?
(Michael R Brent)
August 2007, Volume 25, No 8; pp 883 - 885
doi: 10.1038/nbt0807-883

How do shotgun proteomics algorithms identify proteins?
(Edward M Marcotte)
July 2007, Volume 25, No 7; pp 755 - 757
doi: 10.1038/nbt0707-755

What is a support vector machine?
(William S Noble)
December 2006, Volume 24, No 12; pp 1565 - 1567
doi: 10.1038/nbt1206-1565

How does DNA sequence motif discovery work?
(Patrik D'haeseleer)
August 2006, Volume 24, No 8; pp 959 - 961
doi: 10.1038/nbt0806-959

What are DNA sequence motifs?
(Patrik D'haeseleer)
April 2006, Volume 24, No 4; pp 423 - 425
doi: 10.1038/nbt0406-423

Inference in Bayesian networks
(Chris J Needham, James R Bradford, Andrew J Bulpitt & David R Westhead)
January 2006, Volume 24, No 1; pp 51 - 53
doi: 10.1038/nbt0106-51

How does gene expression clustering work?
(Patrik D'haeseleer)
December 2005, Volume 23, No 12; pp 1499 - 1501
doi: 10.1038/nbt1205-1499

How do RNA folding algorithms work?
(Sean R Eddy)
November 2004, Volume 22, No 11; pp 1457 - 1458
doi: 10.1038/nbt1104-1457

What is a hidden Markov model?
(Sean R Eddy)
October 2004, Volume 22, No 10; pp 1315 - 1316
doi: 10.1038/nbt1004-1315

What is Bayesian statistics?
(Sean R Eddy)
September 2004, Volume 22, No 9; pp 1177 - 1178
doi: 10.1038/nbt0904-1177

Where did the BLOSUM62 alignment score matrix come from?
(Sean R Eddy)
August 2004, Volume 22, No 8; pp 1035 - 1036
doi: 10.1038/nbt0804-1035

What is dynamic programming?
(Sean R Eddy)
July 2004, Volume 22, No 7; pp 909 - 910
doi: 10.1038/nbt0704-909

SNP imputation in association studies
(Eran Halperin & Dietrich A Stephan)
April 2009, Vol 27, No 4; pp 349 - 351
doi: 10.1038/nbt0409-349

Maximizing power in association studies
(Eran Halperin & Dietrich A Stephan)
March 2009, Vol 27, No 3; pp 255 - 256
doi: 10.1038/nbt0309-255

-- RickardSandberg - 27 Apr 2009