Bioinformatics Practical Exercises:

Lecture 1: Sequence Analysis

Exercise 1: Sequence Analysis

Lecture 2: Protein Bioinformatics, part1, part2

Exercise 2: Protein Bioinformatics

Lecture 3: RNA Bioinformatic, part1.pdf, part2.pdf

Exercise 3: RNA_bioinformatics_lab.pdf

send the results per email to: Rickard.Sandberg@ki.se

Links

conservation of alternative and constitutive exons:

red exons: alternative exons with evidence in both human and mouse.

black exons: constitutive exons in both human and mouse.

Yeo_et_al

Pfam
http://www.sanger.ac.uk/Software/Pfam/
http://www.sanger.ac.uk/Software/Pfam/help/index.shtml (help)

Prosite
http://www.expasy.ch/prosite/
http://www.expasy.ch/prosite/prosuser.html (user manual)

Other protein domain databases (not used in this exercise):
BLOCKS: http://blocks.fhcrc.org/
COG: http://www.ncbi.nlm.nih.gov/COG/

ProtScale
http://www.expasy.ch/cgi-bin/protscale.pl

SignalP and TargetP

http://www.cbs.dtu.dk/services

BLAST, http://blast.ncbi.nlm.nih.gov/Blast.cgi

-- RickardSandberg - 27 Mar 2009