50 Recent Changes in BioinfoCourse Web retrieved at 11:57 (GMT)

Group four Bioinformatics analysis of mixed lineage leukemia (MLL) Masako Harada, Department of Oncology and Pathology, CCK, KI Goncalo Castelo Branco, Department ...

This is the page for Group Smc1 (Christine, Charlotte and Giulia) Introduction SMC proteins represent a large family of ATPases that participate in many aspects ...

The course practicals cover following topics: Database searching, Genome browsers (Ensembl and UCSC) Sequence analysis tools (nucleic acid and protein sequence analysis ...

Splicing Practical In your quest to understand gene regulation instem cells you sequenced a cDNA library from mouse ES cells and found anapparent splice variant of ...

The course provides essential, practical knowledge about computational and bioinformatics methods in biology with focus on developmental biology. The integration of ...

Statistics for nop BioinfoCourse Web Month: Topic views: Topic saves: File uploads: Most popular topic views: Top contributors for topic ...

Day 1: 25 May 2009 (Monday) Introduction, General databases tools 09.00 10.20 (Room D224 at CMB, von Eulers v 3) Lecture: Introduction to the course and bioinformatics ...

Information about examination The exam takes places on Friday, May 29 in the seminar room D224 at CMB. The exam consists of project presentations by the course students ...

By looking into the USCS Genome Browser (http://genome.uscs.edu/) we are able to find out general features about Notch1, such as the locus on the genome, different ...

The course team: Matti Nikkola (course director), DBRM Yun Ping Lim (course examiner), NUS Singapore Carsten Daub, RIKEN in Yokohama Erik Arner ...

MasakoHarada 16 May 2008 miRNAs and other class of non coding RNAs miRNA target sites Using USCS browser with TargetScan, miRNA target sites were predicted on 3 ...

This page contains links to important bioinformatics resources on the internet. Genomes and Gene Annotations: USCS Genome Browser Ensembl Genome Browser NCBI Genome ...

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Group three Notch 1 (Heather, Sana, Sebastian) Introduction Notch signalling is a very important signalling pathway in both development and disease. First identified ...

Group Two (Maria, Tony, Marina) proudly presents: The Role Of Cux2 During Development And Disease Introduction Structure of the Cux2 Gene and Protein Tissue specific ...

Project Title: Bioinformatics analysis on Bryostatin By: Lim Yun Ping Introduction The marine ecosystem has increasingly been the focus of interest for new discoveries ...

Yun Ping Lim is from the National University of Singapore. She is a biologist who has been in the Applied Bioinformatics field for 9 years. She has project managed ...

Your lab has been studying a specific lymphoma in which the chromatin associated protein High Mobility Group A2 (Hmga2) is implicated. The gene is known to be expressed ...

SNP Bioinformatics lab You are studying hemochromatosis and have a candidate gene for the disease. There is an EST sequence from a patient and you are trying to find ...

ErikArner 13 May 2008   Sequence analysis tools #8211; practicalThe purpose of this practical is to give a basic understanding of common tools for similarity searching ...

nop BioinfoCourse Web Preferences The following settings are web preferences of the BioinfoCourse web. These preferences overwrite the site level preferences ...

HeatherMain 19 May 2008 UniGene EST expression analysis Notch1 ............................................................................................... ...

MariaLotka 19 May 2008 Two genes, and p27Kip1 , have been shown to be directley regulated by Cux2. To search for CCAAT binding motifs in the promoter sequences ...

SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains.Amino acid sequence homology of SMC proteins between species ...

AnthonyOosterveen 19 May 2008 Single Nucleotide Polymorphism We searched for variation in sequences in the Cux2 locus in the human genome. We found four polymorphisms ...

AnthonyOosterveen 19 May 2008 The miRNA target sites for Cux2 To investigate if there are any miRNA against Cux2 we used the UCSC genome browser and looked at the ...

MariaLotka 19 May 2008 Discussion Cux2 is a transcription factor containing four well conserved DNA binding domains, three Cut domains and one Homeodomain. ...

The Cux2 gene Human Cux2 is located on the strand of chromosome 12. There are two alternative splicing variants of Cux2, using different first exons. The Refseq transcript ...

We used UCSC Genome B rowser to identify conserved regions and transcription factor binding sites within these. The most well conserved region is the one surrounding ...

GoncaloCasteloBranco 17 May 2008 Gene expression In order to determine the general expression pattern of MLL in different human cell and tissues. we perform a query ...

HeatherMain 19 May 2008 Regulation of Notch Signalling Analysis of aligned/conserved TFBS in the first 1000bp of the Notch1 promoter using rvista 2.0. Nothing amazing ...

GoncaloCasteloBranco 17 May 2008 Cis regulatory regions of MLL Conservation In order to identify cis regulatory regions of the MLL genes, we first analyzed in the ...

MariaLotka 19 May 2008 To determine the expression pattern of Cux2 in human tissue we perform a query against the protein in SymAtlas, a database for published experimental ...

GiuliaGaudenzi 19 May 2008

GoncaloCasteloBranco 17 May 2008   MLL transcripts The MLL gene spans approximately 89 kb of DNA and contains 36 exons exons. Analysis of MLL in the UCSC genome browser ...

GoncaloCasteloBranco 17 May 2008   Introduction MLL MLL (mixed lineage leukemia) is a large gene that spans approximately 88 kb of DNA and contains 36 exons (see ...

AnthonyOosterveen 19 May 2008 Introduction In Drosophila embryos, Cut is a Notch signaling target gene required for external sensory organ development of cells ...

CharlotteKarlsson 16 May 2008 msa.pdf

ChristineOberg 16 May 2008 Disease linkage An X linked form of the disorder Cornelia de Lange syndrome can be caused by mutations in the SMCa1 gene (OMIM). Cornelia ...

PNG SanaEltayeb 19 May 2008

GiuliaGaudenzi 19 May 2008 Homo sapiens nop SMC1A Mus musculus SMC1A Saccharomyces cerevisiae SMC1

GiuliaGaudenzi 19 May 2008 Homo sapiens nop SMC1A Mus musculus SMC1A Saccharomyces cerevisiae SMC1

clustalw2.txt The sequences used are here. notch human.txt SanaEltayeb 19 May 2008

GoncaloCasteloBranco 17 May 2008   Introduction MLL     Source (Entrez Gene)     MLL in disease Recurring chromosomaltranslocations involving chromosome 11, band ...

CharlotteKarlsson 16 May 2008

MicroArray Gene Set Practical In this practical we will re analyze microarray data from a study on mouse embryoid bodies. Summary of Experiment as Described in Gene ...

1. The Bryostatin gene sequence was obtained using Entrez to search the Genbank databases.Results show 3 hits, the correct one is accession id: DQ889942 Candidatus ...