09.00 - 10.20 (Room D224 at CMB, von Eulers v 3) Lecture: Introduction to the course and bioinformatics - Rickard Sandberg & Lim Yun Ping

10.20 - 10.50 Coffee break

10.50 - 12.00 (D224) Lecture: Bioinformatics tools & databases – Lim Yun Ping

12.00 - 13.00 Lunch break (lunch not included in the course)

13.00 - 16.00 (Computer halls Space and Dot at Berzelius) Practical: Database & wiki – Lim Yun Ping

Day 2: 26 May 2009 (Tuesday) Sequence analysis

09.00 - 09.45 (D224) Lecture: Sequence alignments - Erik Arner, RIKEN

09.45 - 10.00 Coffee break

10.00 - 10.45 (D224) Genome assembly and annotations - Erik Arner, RIKEN

10.45 - 12.00 (D224) Advanced use of genome browsers - Carsten Daub, RIKEN

12.00 - 13.00 Lunch break

13.00 - 16.00 (Computer halls Space and Dot at Berzelius) Practical: Alignments, assembly & annotations - Carsten Daub / Erik Arner, RIKEN

Day 3: 27 May 2009 (Wednesday) Protein bioinformatics

09.00 - 09.45 (D224) Lecture: Protein motifs and domains

09.45 - 10.00 Coffee break

10.00 - 10.45 (D224) Lecture: Protein Structure prediction: membrane proteins - Arne Elofsson, SU

11.00 - 11.45 (D224) Lecture: Galaxy: a web site for genome wide biology - TBA

12.00 - 13.00 Lunch break

13.00 - 16.00 (Computer halls Space and Dot at Berzelius) Practical: Protein bioinformatics - TBA

Day 4: 28 May 2009 (Thursday) RNA Bioinformatics

09.00 - 09.45 (D224) Applications of next generation sequencing techniques - Rickard Sandberg, CMB

09.45 - 10.00 Coffee break

10.00 - 10.45 (D224) Transcriptomics bioinformatics -Rickard Sandberg, CMB

11.00 - 11.45 (D224) Core promoters - Albin Sandelin, University of Copenhagen, DK

12.00 - 13.00 Lunch break

13.00 - 13.45 (Computer halls Space and Dot at Berzelius) Practical: Gene regulation bioinformatics - Rickard Sandberg & Daniel Ramkold, CMB, KI

Day 5: 29 May 2009 (Friday)

09.00 - 12.00 (Space & Dot) Preparation time for mini project

12.00 - 13.00 Lunch break

13.00 - 16.00 (D224) Examination: Student presentations and examination of presentations

Electronic course evaluation

The course evaluation is carried out electronically using the websurvey tool. Every course participant receives an email with a unique, anonymous link to the course evaluation tool.