http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S The ResearchSchool/CC1837_Y08S web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. en-us Copyright 2012 by contributing authors TWiki Administrator [jesper.lundgren@ki.se] The contributing authors of TWiki TWiki http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S http://www.dbrm.se/twiki5/pub/TWiki/TWikiLogos/T-logo-140x40-t.gif http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/GroupFour Group four Bioinformatics analysis of mixed lineage leukemia (MLL) Masako Harada, Department of Oncology and Pathology, CCK, KI Goncalo Castelo Branco, Department ... (last changed by MartinDahlo) 2009-07-13T12:00:53Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/Practicals The course practicals cover following topics: Database searching, Genome browsers (Ensembl and UCSC) Sequence analysis tools (nucleic acid and protein sequence analysis ... (last changed by MartinDahlo) 2009-07-13T12:00:53Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/Schedule Day 1: 12 May 2008 09.00 09.45 (Room D224 at CMB, von Eulers v 3) Lecture: Introduction to the course, practical issues #8211; Matti Nikkola 09.45 10.15 Coffee ... (last changed by MartinDahlo) 2009-07-13T12:00:53Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/Splicing Splicing Practical In your quest to understand gene regulation instem cells you sequenced a cDNA library from mouse ES cells and found anapparent splice variant of ... (last changed by MartinDahlo) 2009-07-13T12:00:53Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/GroupOne This is the page for Group Smc1 (Christine, Charlotte and Giulia) Introduction SMC proteins represent a large family of ATPases that participate in many aspects ... (last changed by MartinDahlo) 2009-07-13T12:00:53Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/Resources This page contains links to important bioinformatics resources on the internet. Genomes and Gene Annotations: USCS Genome Browser Ensembl Genome Browser NCBI Genome ... (last changed by RickardSandberg) 2009-04-27T13:34:32Z RickardSandberg http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/YunPing Yun Ping Lim has worked on the following projects: B. T. K. Lee, L. Liew, J. Lim, J.K.L. Tan, T.C. Lee, P.S. Veladandi, Y.P. Lim , H. Han, G. Rajagopal, N. L. Anderson ... (last changed by LimYunPing) 2009-03-16T15:03:22Z LimYunPing http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/Venue (last changed by MartinDahlo) 2008-07-03T07:12:51Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/SebastiansAnalysis By looking into the USCS Genome Browser (http://genome.uscs.edu/) we are able to find out general features about Notch1, such as the locus on the genome, different ... (last changed by MartinDahlo) 2008-07-03T07:12:51Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/Examination Information about examination The exam takes places on Tuesday, May 20 in the seminar room D224 at CMB. The exam consists of project presentations by the course students ... (last changed by MartinDahlo) 2008-07-03T07:12:50Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/GroupThree Group three Notch 1 (Heather, Sana, Sebastian) Introduction Notch signalling is a very important signalling pathway in both development and disease. First identified ... (last changed by MartinDahlo) 2008-07-01T13:14:38Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/TheGene The Cux2 gene Human Cux2 is located on the strand of chromosome 12. There are two alternative splicing variants of Cux2, using different first exons. The Refseq transcript ... (last changed by MarinaFranck) 2008-05-19T19:23:08Z unknown http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/NewPage We used UCSC Genome B rowser to identify conserved regions and transcription factor binding sites within these. The most well conserved region is the one surrounding ... (last changed by MarinaFranck) 2008-05-19T19:05:46Z unknown http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/GcBExpression GoncaloCasteloBranco 17 May 2008 Gene expression In order to determine the general expression pattern of MLL in different human cell and tissues. we perform a query ... (last changed by GoncaloCasteloBranco) 2008-05-19T16:52:01Z unknown http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/GcbCisregulatoryregions GoncaloCasteloBranco 17 May 2008 Cis regulatory regions of MLL Conservation In order to identify cis regulatory regions of the MLL genes, we first analyzed in the ... (last changed by GoncaloCasteloBranco) 2008-05-19T16:41:31Z unknown http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837_Y08S/SeeAlignment GiuliaGaudenzi 19 May 2008 (last changed by GiuliaGaudenzi) 2008-05-19T15:09:28Z unknown