By looking into the USCS-Genome Browser (http://genome.uscs.edu/) we are able to find out general features about Notch1, such as the locus on the genome, different splice variants and conserved domains in different species.

Notch1_in_USCS-genome_browser.JPG


.

The Pfam-database (http://pfam.sanger.ac.uk/) holds information about the protein-domain structur of Notch1, which can be seen as an assembled overview below:

.

Notch1_Seq1.JPG

Notch1_Seq2.JPG

Notch1_Seq3.JPG

.

.

To discribe the above shown protein-domains, particular characterisations are listed below:

.

EGF-like_domain.JPG

Calcium_binding_EGF_domain.JPG

Notch-domain.JPG

.


NOD and NODP represent a region present in many NOTCH proteins and NOTCH homologs in multiple species. The role of the NOD and NODP domains remain to be elucidated.


.

Ankyrin-repeat.JPG

.

The tertiary structure of Notch1 assembled of the mentioned domains, binding to the (DNA-binding) CSL-protein :

Notch_structure.JPG

.


References:

http://genome.uscs.edu/

http://pfam.sanger.ac.uk/

.



-- SebastianHildebrand - 19 May 2008

Topic attachments
I Attachment Action Size Date Who Comment
Unknown file formatJPG Ankyrin-repeat.JPG manage 50.6 K 2008-05-19 - 16:11 UnknownUser  
Unknown file formatJPG Calcium_binding_EGF_domain.JPG manage 57.7 K 2008-05-19 - 15:31 UnknownUser  
Unknown file formatJPG EGF-like_domain.JPG manage 64.5 K 2008-05-19 - 15:10 UnknownUser  
Unknown file formatJPG Notch-domain.JPG manage 57.0 K 2008-05-19 - 19:29 UnknownUser  
Unknown file formatJPG Notch1.JPG manage 124.6 K 2008-05-19 - 12:00 UnknownUser  
Unknown file formatJPG Notch1_Seq1.JPG manage 14.5 K 2008-05-19 - 16:37 UnknownUser  
Unknown file formatJPG Notch1_Seq2.JPG manage 15.6 K 2008-05-19 - 15:19 UnknownUser  
Unknown file formatJPG Notch1_Seq3.JPG manage 8.1 K 2008-05-19 - 14:31 UnknownUser  
Unknown file formatJPG Notch1_in_USCS-genome_browser.JPG manage 110.8 K 2008-05-19 - 13:46 UnknownUser  
Unknown file formatJPG Notch_domain.JPG manage 122.1 K 2008-05-19 - 10:29 UnknownUser  
Unknown file formatJPG Notch_structure.JPG manage 29.8 K 2008-05-19 - 19:32 UnknownUser  
JPEGjpg notchstructure.jpg manage 20.8 K 2008-05-19 - 18:19 UnknownUser  
Topic revision: r7 - 2008-07-03 - MartinDahlo

Bioinformatics for Cell Biologists (Spring -08)

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