Day 1: 12 May 2008

09.00 - 09.45 (Room D224 at CMB, von Eulers v 3) Lecture: Introduction to the course, practical issues – Matti Nikkola

09.45 - 10.15 Coffee break

10 30 - 12.00 (D224) Lecture: Databases.pdf– Carsten Daub

12.00 - 13.00 Lunch break (lunch not included in the course)

13.00 - 16.00 (Computer halls Space and Dot at Berzelius) Practical: Database resources – Carsten Daub / Erik Arner / Rickard Sandberg

Day 2: 13 May 2008

09.00 - 10.15 (Space & Dot) Lecture: Sequence_Analysis_Tools.pdf- Erik Arner 10.15 - 10.30 Coffee break 10.30 - 12.00 (Space & Dot) Sequence_analysis_tools_practical.pdf- Erik Arner / Carsten Daub / Rickard Sandberg 12.00 - 13.00 Lunch break<?xml:namespace prefix = o />

13.00 - 13.45 (D224) Lecture: Genome_Assembly_and_Annotation.pdf- Carsten Daub / Erik Arner

14.00 - 14.45 (D224) Lecture: GenomeBrowsersPrac.pdf - Carsten Daub / Erik Arner

15.15 - 16.00 (D224) Lecture: Genome browsers (UCSC and ENSEMBL) - Carsten Daub / Erik Arner

Day 3: 14 May 2008

09.00 - 09.45 (Space & Dot) Lecture: Genome browsers - Carsten Daub / Erik Arner

09.45 - 10.15 Coffee break

10.15 - 12.00 (Space & Dot) GenomeBrowsersPrac.pdf- Carsten Daub / Erik Arner / Rickard Sandberg

12.00 - 13.00 Lunch break

13.00 - 13.45 (D224) Lecture: microRNA bioinformatics - Ellen Sherwood / Rickard Sandberg

14.00 - 14.45 (D224) Lecture: SNP bioinformatics - Ellen Sherwood / Rickard Sandberg

15.15 - 16.00 (D224) Lecture: Alternative Splicing bioinformatics - Ellen Sherwood / Rickard Sandberg

Day 4: 15 May 2008

09.00 - 09.45 (Space & Dot) Practical: SNPs, microRNAs and alternative splicing - Ellen Sherwood / Rickard Sandberg

09.45 - 10.15 Coffee break

10.15 - 12.00 (Space & Dot) Practical: SNPs, microRNAs and alternative splicing - Ellen Sherwood / Rickard Sandberg

12.00 - 13.00 Lunch break

13.00 - 13.45 (D224) Lecture: Transcription Factor Binding Sites - Ellen Sherwood / Rickard Sandberg

14.00 - 14.45 (D224) Lecture: Expression Analysis - Ellen Sherwood / Rickard Sandberg

15.15 - 16.00 (D224) Lecture: TWiki.ppt- Yun Ping Lim

Day 5: 16 May 2008

09.00 - 09.45 (Space & Dot) Practical: Using Wiki - Yun Ping Lim

09.45 - 10.15 Coffee break

10.15 - 12.00 (Space & Dot) Practical: Expression Analysis and Splicing - Rickard Sandberg

12.00 - 13.00 Lunch break

13.00 - 13.45 (D224) Lecture: Comparative Genomics - Rickard Sandberg

14.00 - 14.45 (D224) Lecture: Visualization of Biological Data and Future Bioinformatics - Rickard Sandberg

15.00 - 16.00 Examination groups meet to discuss and plan project

Weekend (beautiful May weather scheduled)

Day 6: 19 May 2008

09.00 - 12.00 (Space & Dot) Practical: Preparation time for mini project with assistance - Yun Ping Lim, Matti Nikkola et al.

12.00 - 13.00 Lunch break

13.00 - 16.00 (Space & Dot) Practical: Preparation time for mini project with assistance - Yun Ping Lim, Matti Nikkola et al.

Day 7: 20 May 2008

09.00 - 12.00 (D224) Examination: Student presentations and examination of presentations

Electronic course evaluation

The course evaluation is carried out electronically using the websurvey tool. Every course participant receives an email with a unique, anonymous link to the course evaluation tool.