This page contains links to important bioinformatics resources on the internet.

Genomes and Gene Annotations:

USCS Genome Browser

Ensembl Genome Browser

NCBI Genome Biology

Gene Ontology

Mapping of Sequences to Genomes and Transcriptomes:

BLAT

BLAST: Basic Local Alignment Search Tool

SIM4

Gene Set Enrichments (e.g. Pathways) Online Tools:

DAVID

GOminer

GSEA

Sequence Motifs:

Splice site strengths

Sequence LOGOs

ESE-finder

microRNA sites:

miRBase

TargetScan

TargetRank

Developmental Expression Patterns:

Allen Brain Map

Mamep: in situ of mouse embryos

GenePaint

VisiGene

Online workbench for genome-wide studies

Galaxy

Gene Expression Deposits:

Gene Expression Omnibus

ArrayExpress

Celsius

Programming Courses for Biologists:

Python Course in Bioinformtics, Pasteur Institute

Python Programming for Bioinformtics