The course practicals cover following topics: Database searching, Genome browsers (Ensembl and UCSC) Sequence analysis tools (nucleic acid and protein sequence analysis) Sequence alignment (homology, pairwise, multiple alignment,understanding how BLAST programs, PSI BLAST works.

SNPs: SNPPractical

Alternative Splicing, microRNA target sites: HMGA2 practical

Alternative Splicing: Alignment practical

Expression Analysis: Expression practical

Nonsense mediated decay: NMD practical

Transcription Factor Binding Sites: Transcription Factor Binding Sites

Microarray Gene Set Analysis: Gene Set Practical

Topic attachments
I Attachment Action Size Date Who Comment
GIFgif Alignment_genomic_mRNA.gif manage 419.1 K 2008-05-14 - 06:11 RickardSandberg  
Microsoft Word filedoc Expression.doc manage 19.5 K 2008-05-14 - 13:36 RickardSandberg Expression Practical
GIFgif Genomic_context.gif manage 27.7 K 2008-05-14 - 06:11 RickardSandberg  
Microsoft Word filedoc HMGA2.doc manage 20.5 K 2008-05-14 - 06:10 RickardSandberg Lab on Isoforms and microRNAs
Microsoft Word filedoc SNP_Bioinformatics_lab.doc manage 24.5 K 2008-05-14 - 06:04 EllenSherwood SNP Bioinformatics practical
Microsoft Word filedoc Splicing.doc manage 94.5 K 2008-05-14 - 06:11 RickardSandberg Splicing Task
Unknown file formatfas translocated.fas manage 0.6 K 2008-05-14 - 06:11 RickardSandberg  
Topic revision: r20 - 2009-07-13 - MartinDahlo

Bioinformatics for Cell Biologists (Spring -08)

Course Information

DBRM
Knowledge Base
Research School


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