http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837 The ResearchSchool/CC1837 web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. en-us Copyright 2012 by contributing authors TWiki Administrator [jesper.lundgren@ki.se] The contributing authors of TWiki TWiki http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837 http://www.dbrm.se/twiki5/pub/TWiki/TWikiLogos/T-logo-140x40-t.gif http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/Schedule Schedule to pages with course schedule (last changed by MattiNikkola) 2010-03-16T10:53:34Z MattiNikkola http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/WebHome Bioinformatics for Cell Biologists March 15 19, 2010 The course provides essential, practical knowledge about computational methods in biology with focus on developmental ... (last changed by MattiNikkola) 2010-03-16T10:53:00Z MattiNikkola http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/Venue Venue The course venue is the Computer hall Space at the Berzelius laboratory (same building as the KI library, the KI bookstore and the Jöns Jacob Restaurant). (last changed by MattiNikkola) 2010-02-07T16:18:58Z MattiNikkola http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/PastYears PastYears These are links to the previous course homepages.   2008 Spring Semester (last changed by MartinDahlo) 2009-07-13T12:00:54Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/Examination Examination The exam takes places on Tuesday, May 29 in the seminar room A216 at CMB. The exam consists of project presentations by the course students using the ... (last changed by MartinDahlo) 2009-07-13T12:00:54Z MartinDahlo http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/WebResources Core set of Web Resources covered: NCBI Databases: Entrez Gene Homologene Blast, variations of blast GEO REFSEQ UNIPROT SWISSPROT Gene ontology KEGG pathways ... (last changed by LimYunPing) 2009-06-12T06:48:56Z LimYunPing http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/GroupThree Group3: LIM homeobox transcription factor 1 alpha (Lmx1a) Jamie, Gayathri Emma Introduction Lmx1a was initially found to be expressed in insulin producing beta ... (last changed by JamieMong) 2009-05-29T10:42:19Z JamieMong http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/GroupTwo Bioinformatics study on Bruton's Tyrosine Kinase (BTK) Introduction Bruton's agammaglobulinemia tyrosine kinase (Btk) is a cytoplasmic tyrosine kinase important in ... (last changed by HossainNawaz) 2009-05-29T10:06:37Z unknown http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/GroupOne IndranilSinha 25 May 2009 SETD2 SET domain containing 2 Official Symbol SETD2 and Name: SET domain containing 2 Homo sapiens Other Aliases: FLJ16420, FLJ22472 ... (last changed by AmmadKhan) 2009-05-29T10:06:12Z AmmadKhan http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/BackGround IndranilSinha 29 May 2009 Histone Overview (Figure from Biology: Concepts and Connections by Campell, Mitchell, and Reece. Text from Introduction to Cell and Molecular ... (last changed by IndranilSinha) 2009-05-29T09:57:07Z IndranilSinha http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/ProteinStructure BinZhao 28 May 2009 Protein Structure Protein name: Tyrosine protein kinase BTK Organism: sapiens (Human) Sequence length: 659 AA. Subcellular location: Cytoplasm ... (last changed by BinZhao) 2009-05-29T09:26:03Z BinZhao http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/RegulationRNA . BTK mRNA . . . . Splicing prediction (GENSCAN) . . . . Regulation of expression . . . . Regulation of expression (zoomed to upstream region) . . . . Regulation ... (last changed by HossainNawaz) 2009-05-29T09:03:27Z unknown http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/IntroductionDNA BTKbase (last changed by HossainNawaz) 2009-05-29T09:02:43Z unknown http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/HapMap (last changed by JamieMong) 2009-05-29T08:45:58Z JamieMong http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/Regulationofsetd2 AmmadKhan 28 May 2009 Pilot ENCODE Transcription Affy RNA... No data chr3 BU First Exon No data chr3 Riken CAGE No data chr3 Stanf Promoter No data chr3 Stanf ... (last changed by AmmadKhan) 2009-05-28T20:20:34Z AmmadKhan http://www.dbrm.se/twiki5/bin/view/ResearchSchool/CC1837/SeqOfSET2 Sequences of SET2 Homo sapiens MERRGKYSSKLERESKRTSENEAIKRCCSPPNELGFRRGSSYSKHDSSASRYKSTLSKPIPKSDKFKNSFCCTELNEEIKQSHSFSLQTPCSKGSELRMINKNPEREKAGSPAPSNRLNDSPTLKKLDELPIFKSEFITHDSHDSIKELDSLSKVKNDQLRSFCPIELNINGSPGAESDLATFCTSKTDAVLMTSDDSVTGSELSPLVKACMLSSNGFQNISRCKEKDLDDTCMLHKKSESPFRETEPLVSPHQDKLMSMPVMTVDYSKTVVKEPVDTRVSCCKTKDSDIYCTLNDSNPSLCNSEAENIEPSVMKISSNSFMNVHLESKPVICDSRNLTDHSKFACEEYKQSIGSTSSASVNHFDDLYQPIGSSGIASSLQSLPPGIKVDSLTLLKCGENTSPVLDAVLKSKKSSEFLKHAGKETIVEVGSDLPDSGKGFASRENRRNNGLSGKCLQEAQEEGNSILPERRGRPEISLDERGEGGHVHTSDDSEVVFSSCDLNLTMEDSDGVTYALKCDSSGHAPEIVSTVHEDYSGSSESSNDESDSEDTDSDDSSIPRNRLQSVVVVPKNSTLPMEETSPCSSRSSQSYRHYSDHWEDERLESRRHLYEEKFESIASKACPQTDKFFLHKGTEKNPEISFTQSSRKQIDNRLPELSHPQSDGVDSTSHTDVKSDPLGHPNSEETVKAKIPSRQQEELPIYSSDFEDVPNKSWQQTTFQNRPDSRLGKTELSFSSSCEIPHVDGLHSSEELRNLGWDFSQEKPSTTYQQPDSSYGACGGHKYQQNAEQYGGTRDYWQGNGYWDPRSGRPPGTGVVYDRTQGQVPDSLTDDREEEENWDQQDGSHFSDQSDKFLLSLQKDKGSVQAPEISSNSIKDTLAVNEKKDFSKNLEKNDIKDRGPLKKRRQEIESDSESDGELQDRKKVRVEVEQGETSVPPGSALVGPSCVMDDFRDPQRWKECAKQGKMPCYFDLIEENVYLTERKKNKSHRDIKRMQCECTPLSKDERAQGEIACGEDCLNRLLMIECSSRCPNGDYCSNRRFQRKQHADVEVILTEKKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDATQKGNCSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYGKEAQKCFCGSANCRGYLGGENRVSIRAAGGKMKKERSRKKDSVDGELEALMENGEGLSDKNQVLSLSRLMVRIETLEQKLTCLELIQNTHSQSCLKSFLERHGLSLLWIWMAELGDGRESNQKLQEEIIKTLEHLPIPTKNMLEESKVLPIIQRWSQTKTAVPPLSEGDGYSSENTSRAHTPLNTPDPSTKLSTEADTDTPKKLMFRRLKIISENSMDSAISDATSELEGKDGKEDLDQLENVPVEEEEELQSQQLLPQQLPECKVDSETNIEASKLPTSEPEADAEIEPKESNGTKLEEPINEETPSQDEEEGVSDVESERSQEQPDKTVDISDLATKLLDSWKDLKEVYRIPKKSQTEKENTTTERGRDAVGFRDQTPAPKTPNRSRERDPDKQTQNKEKRKRRSSLSPPSSAYERGTKRPDDRYDTPTSKKKVRIKDRNKLSTEERRKLFEQEVAQREAQKQQQQMQNLGMTSPLPYDSLGYNAPHHPFAGYPPGYPMQAYVDPSNPNAGKVLLPTPSMDPVCSPAPYDHAQPLVGHSTEPLSAPPPVPVVPHVAAPVEVSSSQYVAQSDGVVHQDSSVAVLPVPAPGPVQGQNYSVWDSNQQSVSVQQQYSPAQSQATIYYQGQTCPTVYGVTSPYSQTTPPIVQSYAQPSLQYIQGQQIFTAHPQGVVVQPAAAVTTIVAPGQPQPLQPSEMVVTNNLLDLPPPSPPKPKTIVLPPNWKTARDPEGKIYYYHVITRQTQWDPPTWESPGDDASLEHEAEMDLGTPTYDENPMKASKKPKTAEADTSSELAKKSKEVFRKEMSQFIVQCLNPYRKPDCKVGRITTTEDFKHLARKLTHGVMNKELKYCKNPEDLECNENVKHKTKEYIKKYMQKFGAVYKPKEDTELE ... (last changed by MartinDahlo) 2009-05-28T08:25:02Z MartinDahlo